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julia: update to 1.5.0. 

This update uses as many system shlibs as possible, including llvm10,
which seems to pass the included test suite more or less as well as
using the in-tree, patched llvm9. If any issues arise, it may be
necessary to drop the llvm10 dependency and set USE_SYSTEM_LLVM=0 for a
rebuild.

The linear algebra libraries are still vendored, because julia likes to
use an ILP64 ABI for BLAS while the Void openblas uses an LP64 ABI.

Closes #24097.

Co-authored-by: Adam Beckmeyer <adam_gpg@thebeckmeyers.xyz>
Co-authored-by: Andrew J. Hesford <ajh@sideband.org>
This commit is contained in:
Adam Beckmeyer 2020-08-03 11:14:03 -04:00 committed by Andrew J. Hesford
parent 2837998ae8
commit a47b73335a
2 changed files with 150 additions and 35 deletions
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104
srcpkgs/julia/patches/36697.diff Normal file
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@ -0,0 +1,104 @@
This patch was taken from <https://github.com/JuliaLang/julia/pull/36697>
to workaround julia 1.5.0 not building correctly with musl libc.
diff --git Make.inc Make.inc
index e91461514463..21a0299318b5 100644
--- Make.inc
+++ Make.inc
@@ -940,17 +940,17 @@ LIBUNWIND:=
else
ifeq ($(USE_SYSTEM_LIBUNWIND), 1)
ifneq ($(OS),Darwin)
-LIBUNWIND:=-lunwind-generic -lunwind
+LIBUNWIND:=-lunwind
# Only for linux since we want to use not yet released libunwind features
JCFLAGS+=-DSYSTEM_LIBUNWIND
JCPPFLAGS+=-DSYSTEM_LIBUNWIND
endif
else
ifeq ($(OS),Darwin)
-LIBUNWIND:=$(build_libdir)/libosxunwind.a
+LIBUNWIND:=-losxunwind
JCPPFLAGS+=-DLIBOSXUNWIND
else
-LIBUNWIND:=$(build_libdir)/libunwind-generic.a $(build_libdir)/libunwind.a
+LIBUNWIND:=-lunwind
endif
endif
endif
@@ -1206,12 +1206,12 @@ OSLIBS += -lelf -lkvm -lrt -lpthread
OSLIBS += -lgcc_s
OSLIBS += -Wl,--export-dynamic -Wl,--version-script=$(JULIAHOME)/src/julia.expmap \
- $(NO_WHOLE_ARCHIVE) $(LIBUNWIND)
+ $(NO_WHOLE_ARCHIVE)
endif
ifeq ($(OS), Darwin)
SHLIB_EXT := dylib
-OSLIBS += -framework CoreFoundation $(LIBUNWIND)
+OSLIBS += -framework CoreFoundation
WHOLE_ARCHIVE := -Xlinker -all_load
NO_WHOLE_ARCHIVE :=
JLDFLAGS :=
diff --git Makefile Makefile
index 96f58b9aec4e..23d1bd5208f7 100644
--- Makefile
+++ Makefile
@@ -181,6 +181,11 @@ endif
ifeq ($(USE_LLVM_SHLIB),1)
JL_PRIVATE_LIBS-$(USE_SYSTEM_LLVM) += libLLVM libLLVM-9jl
endif
+ifeq ($(OS),Darwin)
+JL_PRIVATE_LIBS-$(USE_SYSTEM_LIBUNWIND) += libosxunwind
+else
+JL_PRIVATE_LIBS-$(USE_SYSTEM_LIBUNWIND) += libunwind
+endif
ifeq ($(USE_SYSTEM_LIBM),0)
JL_PRIVATE_LIBS-$(USE_SYSTEM_OPENLIBM) += libopenlibm
diff --git deps/Makefile deps/Makefile
index e6a975ba1873..90e231f30e85 100644
--- deps/Makefile
+++ deps/Makefile
@@ -157,7 +157,11 @@ ifneq ($(OS), WINNT)
DEP_LIBS += libwhich
endif
-DEP_LIBS_STAGED := $(filter-out suitesparse-wrapper osxunwind,$(DEP_LIBS)) # unlist targets that have not been converted to use the staged-install
+# unlist targets that have not been converted to use the staged-install
+DEP_LIBS_STAGED := $(filter-out suitesparse-wrapper,$(DEP_LIBS))
+ifneq ($(USE_BINARYBUILDER_LIBUNWIND),1)
+DEP_LIBS_STAGED := $(filter-out osxunwind,$(DEP_LIBS))
+endif
## Common build target prefixes
diff --git deps/unwind.mk deps/unwind.mk
index f44917c28981..08d8990a720e 100644
--- deps/unwind.mk
+++ deps/unwind.mk
@@ -109,7 +109,7 @@ UNWIND_BB_NAME := LibUnwind.v$(UNWIND_VER)
$(eval $(call bb-install,unwind,UNWIND,false))
-OSXUNWIND_BB_URL_BASE := https://github.com/JuliaPackaging/Yggdrasil/releases/download/LibOSXUnwind-$(OSXUNWIND_VER)-$(OSXUNWIND_BB_REL)
+OSXUNWIND_BB_URL_BASE := https://github.com/JuliaBinaryWrappers/LibOSXUnwind_jll.jl/releases/download/LibOSXUnwind-v$(OSXUNWIND_VER)+$(OSXUNWIND_BB_REL)
OSXUNWIND_BB_NAME := LibOSXUnwind.v$(OSXUNWIND_VER)
$(eval $(call bb-install,osxunwind,OSXUNWIND,false))
diff --git src/Makefile src/Makefile
index 3153c0178d0a..7d8db3740209 100644
--- src/Makefile
+++ src/Makefile
@@ -120,7 +120,7 @@ CLANG_LDFLAGS += -Wl,-undefined,dynamic_lookup
endif
-COMMON_LIBS := -L$(build_shlibdir) -L$(build_libdir) $(LIBUV) $(LIBUTF8PROC) $(NO_WHOLE_ARCHIVE) $(LLVMLINK) $(OSLIBS) $(LIBUNWIND)
+COMMON_LIBS := -L$(build_shlibdir) -L$(build_libdir) $(LIBUV) $(LIBUTF8PROC) $(NO_WHOLE_ARCHIVE) $(LIBUNWIND) $(LLVMLINK) $(OSLIBS)
DEBUG_LIBS := $(WHOLE_ARCHIVE) $(BUILDDIR)/flisp/libflisp-debug.a $(WHOLE_ARCHIVE) $(BUILDDIR)/support/libsupport-debug.a $(COMMON_LIBS)
RELEASE_LIBS := $(WHOLE_ARCHIVE) $(BUILDDIR)/flisp/libflisp.a $(WHOLE_ARCHIVE) $(BUILDDIR)/support/libsupport.a $(COMMON_LIBS)

81
srcpkgs/julia/template
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@ -1,65 +1,69 @@
# Template file for 'julia'
pkgname=julia
version=1.4.2
version=1.5.0
revision=1
archs="i686* x86_64*"
archs="i686* x86_64* armv7l* aarch64*"
build_style=gnu-makefile
make_build_args="prefix=/usr sysconfdir=/etc datarootdir=/usr/share
USE_LLVM_SHLIB=1 USE_BINARYBUILDER=0
USE_SYSTEM_LIBUV=0 USE_SYSTEM_LIBUNWIND=0 USE_SYSTEM_PATCHELF=1 USE_SYSTEM_LIBM=0
USE_SYSTEM_DSFMT=0 USE_SYSTEM_LLVM=0 USE_SYSTEM_PCRE=1 USE_SYSTEM_BLAS=0
USE_SYSTEM_GMP=1 USE_SYSTEM_LIBGIT2=0 USE_SYSTEM_MBEDTLS=1 USE_SYSTEM_LIBSSH2=1
USE_SYSTEM_CURL=1 USE_SYSTEM_MPFR=1 USE_SYSTEM_SUITESPARSE=0 USE_SYSTEM_UTF8PROC=0
USE_SYSTEM_ZLIB=1 USE_SYSTEM_P7ZIP=1 USE_SYSTEM_LAPACK=0"
USE_BINARYBUILDER=0 USE_SYSTEM_LIBM=0 USE_SYSTEM_DSFMT=0 USE_SYSTEM_LIBUV=0
USE_SYSTEM_SUITESPARSE=0 USE_SYSTEM_BLAS=0 USE_SYSTEM_LAPACK=0 USE_SYSTEM_LLVM=1
USE_SYSTEM_LIBUNWIND=1 USE_SYSTEM_PCRE=1 USE_SYSTEM_GMP=1 USE_SYSTEM_PATCHELF=1
USE_SYSTEM_MPFR=1 USE_SYSTEM_MBEDTLS=1 USE_SYSTEM_LIBSSH2=1 USE_SYSTEM_CURL=1
USE_SYSTEM_ZLIB=1 USE_SYSTEM_P7ZIP=1 USE_SYSTEM_LIBGIT2=1 USE_SYSTEM_UTF8PROC=1
UTF8PROC_INC='${XBPS_CROSS_BASE}/usr/include/libutf8proc'"
make_install_args="$make_build_args"
make_check_args="$make_build_args"
make_check_target=testall
conf_files="/etc/julia/startup.jl"
hostmakedepends="perl cmake python gcc-fortran patchelf which tar xz"
makedepends="pcre2-devel gmp-devel mpfr-devel libcurl-devel
libssh2-devel mbedtls-devel libatomic-devel zlib-devel p7zip"
depends="pcre2 gmp mpfr libcurl libssh2 mbedtls libatomic zlib p7zip"
hostmakedepends="pkg-config perl cmake python gcc-fortran patchelf which tar xz"
makedepends="p7zip pcre2-devel mpfr-devel libgit2-devel libcurl-devel
libssh2-devel mbedtls-devel libatomic-devel zlib-devel libunwind-devel
libutf8proc-devel llvm10"
# Julia provides vendored symlinks in /usr/lib/julia pointing to these libraries,
# but none of the julia executables link to them so these are not auto-detected
depends="libgit2 libcurl mpfr mbedtls libpcre2 libssh2 libquadmath p7zip"
short_desc="High-level, high-performance dynamic programming language"
maintainer="Adam Beckmeyer <adam_git@thebeckmeyers.xyz>"
license="MIT"
homepage="https://julialang.org"
distfiles="https://github.com/JuliaLang/julia/releases/download/v${version}/julia-${version}-full.tar.gz"
checksum=948c70801d5cce81eeb7f764b51b4bfbb2dc0b1b9effc2cb9fc8f8cf6c90a334
nocross=yes
# Falsely detects dependency on libllvm
skiprdeps="/usr/lib/libjulia.so.1.4 /usr/lib/julia/libllvmcalltest.so"
case "$XBPS_TARGET_MACHINE" in
*-musl)
broken="fails to compile internal LLVM"
;;
i686-musl)
makedepends+=" libexecinfo-devel"
depends+=" libexecinfo"
LDFLAGS="-lexecinfo -lc"
;;
x86_64-musl)
makedepends+=" libexecinfo-devel"
depends+=" libexecinfo"
LDFLAGS="-lexecinfo"
;;
esac
checksum=4a6ffadc8dd04ca0b7fdef6ae203d0af38185e57b78f7c0b972c4707354a6d1b
nocross="build system is a mess"
# Targets for the vendored symlinks mentioned above
shlib_requires="libgit2.so.1.0 libcurl.so.4 libmpfr.so.6 libgmp.so.10
libmbedcrypto.so.3 libmbedtls.so.12 libmbedx509.so.0 libpcre2-8.so.0
libssh2.so.1 libquadmath.so.0"
case "$XBPS_TARGET_MACHINE" in
i686*)
export M="pentium4"
export CFLAGS="-march=pentium4"
export CXXFLAGS="-march=pentium4"
export LDFLAGS+=" -Wl,--no-keep-memory"
make_build_args+=" MARCH=pentium4"
make_build_args+=" OPENBLAS_USE_THREAD=0"
export LDFLAGS="-Wl,--no-keep-memory"
make_build_args+=" MARCH=pentium4 OPENBLAS_USE_THREAD=0"
;;
x86_64*)
export M="x86-64"
export CFLAGS="-march=x86-64"
export CXXFLAGS="-march=x86-64"
make_build_args+=" MARCH=x86-64"
;;
armv7l*)
export M="armv7-a"
export CFLAGS="-march=armv7-a"
export CXXFLAGS="-march=armv7-a"
make_build_args+=" MARCH=armv7-a"
;;
aarch64*)
export M="armv8-a"
export CFLAGS="-march=armv8-a"
export CXXFLAGS="-march=armv8-a"
make_build_args+=" MARCH=armv8-a"
;;
esac
post_extract() {
@ -68,6 +72,13 @@ post_extract() {
post_install() {
vlicense LICENSE.md
# julia needlessly copies system libraries into a vendor directory
local _lib
for _lib in libgcc_s.so.1 libgfortran.so.5 libquadmath.so.0; do
rm -f "${DESTDIR}/usr/lib/julia/${_lib}"
ln -s "/usr/lib/${_lib}" "${DESTDIR}/usr/lib/julia"
done
}
julia-devel_package() {