snailed
/
void-packages
2
0
Fork 0
Code Issues 1 Pull Requests 5 Actions Activity

sagemath: update to 10.3.

This commit is contained in:
Gonzalo Tornaría 2023-12-09 11:21:58 -03:00 committed by Leah Neukirchen
parent a8cdcd8beb
commit 488caf8f52
10 changed files with 262 additions and 2252 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

4
srcpkgs/sagemath/files/sage_conf.py
View File

@ -1,4 +0,0 @@
# configuration for sage on void linux
SAGE_SHARE = "/usr/share/sagemath"
GAP_SHARE_DIR = "/usr/share/gap"
JMOL_DIR = "/usr/share/jmol"

1867
srcpkgs/sagemath/patches/35848-flintlib_3.0.patch
View File

File diff suppressed because it is too large Load Diff

92
srcpkgs/sagemath/patches/36769-fix_jmol_detect.patch
View File

@ -1,92 +0,0 @@
diff --git a/src/sage/interfaces/jmoldata.py b/src/sage/interfaces/jmoldata.py
index a68e53e2d85..55c07255b74 100644
--- a/src/sage/interfaces/jmoldata.py
+++ b/src/sage/interfaces/jmoldata.py
@@ -71,6 +71,47 @@ def is_jvm_available(self):
java_version_number = int(re.sub(r'.*version "(0\.|1\.)?(\d*)[\s\S]*', r'\2', version, flags=re.S))
return java_version_number >= 7
+ def jmolpath(self):
+ """
+ Return the path to the jar file.
+
+ EXAMPLES::
+
+ sage: from sage.interfaces.jmoldata import JmolData
+ sage: JData = JmolData()
+ sage: JData.jmolpath()
+ '.../JmolData.jar'
+
+ """
+ jmolpath = os.path.join(JMOL_DIR, "JmolData.jar")
+
+ if sys.platform == 'cygwin':
+ import cygwin
+ jmolpath = cygwin.cygpath(jmolpath, 'w')
+
+ return jmolpath
+
+ def is_jmol_available(self):
+ """
+ Returns True if jmol is available and False if not.
+
+ EXAMPLES:
+
+ Check that it returns a boolean::
+
+ sage: from sage.interfaces.jmoldata import JmolData
+ sage: JData = JmolData()
+ sage: type(JData.is_jmol_available())
+ <... 'bool'>
+ """
+ if not os.path.isfile(self.jmolpath()):
+ return False
+
+ if not self.is_jvm_available():
+ return False
+
+ return True
+
def export_image(self,
targetfile,
datafile, #name (path) of data file Jmol can read or script file telling it what to read or load
@@ -154,12 +195,11 @@ def export_image(self,
sage: archive.close()
"""
# Set up paths, file names and scripts
- jmolpath = os.path.join(JMOL_DIR, "JmolData.jar")
+ jmolpath = self.jmolpath()
target_native = targetfile
if sys.platform == 'cygwin':
import cygwin
- jmolpath = cygwin.cygpath(jmolpath, 'w')
target_native = cygwin.cygpath(target_native, 'w')
if datafile_cmd != 'script':
datafile = cygwin.cygpath(datafile, 'w')
diff --git a/src/sage/plot/plot3d/base.pyx b/src/sage/plot/plot3d/base.pyx
index 253f152130c..7588cde2e27 100644
--- a/src/sage/plot/plot3d/base.pyx
+++ b/src/sage/plot/plot3d/base.pyx
@@ -278,7 +278,7 @@ cdef class Graphics3d(SageObject):
T.export_jmol(scene_zip, **opts)
from sage.interfaces.jmoldata import JmolData
jdata = JmolData()
- if not jdata.is_jvm_available():
+ if not jdata.is_jmol_available():
# We can only use JMol to generate preview if a jvm is installed
from sage.repl.rich_output.output_graphics import OutputImagePng
tachyon = self._rich_repr_tachyon(OutputImagePng, **opts)
diff --git a/src/sage/repl/rich_output/backend_ipython.py b/src/sage/repl/rich_output/backend_ipython.py
index 69e63b76d60..10ccdc0c2c8 100644
--- a/src/sage/repl/rich_output/backend_ipython.py
+++ b/src/sage/repl/rich_output/backend_ipython.py
@@ -369,7 +369,7 @@ def launch_jmol(self, output_jmol, plain_text):
from sage.doctest import DOCTEST_MODE
from sage.interfaces.jmoldata import JmolData
jdata = JmolData()
- if not jdata.is_jvm_available() and not DOCTEST_MODE:
+ if not jdata.is_jmol_available() and not DOCTEST_MODE:
raise RuntimeError('jmol cannot run, no suitable java version found')
launch_script = output_jmol.launch_script_filename()
jmol_cmd = 'jmol'

15
srcpkgs/sagemath/patches/36862-giac_1.9.0-73.patch
View File

@ -1,15 +0,0 @@
diff --git a/src/sage/calculus/calculus.py b/src/sage/calculus/calculus.py
index dfaafb4353f..8d62ade24c8 100644
--- a/src/sage/calculus/calculus.py
+++ b/src/sage/calculus/calculus.py
@@ -568,8 +568,8 @@ def symbolic_sum(expression, v, a, b, algorithm='maxima', hold=False):
An example of this summation with Giac::
- sage: symbolic_sum(1/(1+k^2), k, -oo, oo, algorithm='giac')
- (pi*e^(2*pi) - pi*e^(-2*pi))/(e^(2*pi) + e^(-2*pi) - 2)
+ sage: symbolic_sum(1/(1+k^2), k, -oo, oo, algorithm='giac').factor()
+ pi*(e^(2*pi) + 1)/((e^pi + 1)*(e^pi - 1))
The same summation is solved by SymPy::

182
srcpkgs/sagemath/patches/37004-fix_save_session_when_cython_changes.patch
View File

@ -1,182 +0,0 @@
diff --git a/src/sage/doctest/forker.py b/src/sage/doctest/forker.py
index efd28d10abe..56a9fe5e8f6 100644
--- a/src/sage/doctest/forker.py
+++ b/src/sage/doctest/forker.py
@@ -2477,19 +2477,6 @@ class DocTestTask():
['cputime', 'err', 'failures', 'optionals', 'tests', 'walltime', 'walltime_skips']
"""
- extra_globals = {}
- """
- Extra objects to place in the global namespace in which tests are run.
- Normally this should be empty but there are special cases where it may
- be useful.
-
- For example, in Sage versions 9.1 and earlier, on Python 3 add
- ``long`` as an alias for ``int`` so that tests that use the
- ``long`` built-in (of which there are many) still pass. We did
- this so that the test suite could run on Python 3 while Python 2
- was still the default.
- """
-
def __init__(self, source):
"""
Initialization.
@@ -2614,10 +2601,6 @@ def _run(self, runner, options, results):
# Remove '__package__' item from the globals since it is not
# always in the globals in an actual Sage session.
dict_all.pop('__package__', None)
-
- # Add any other special globals for testing purposes only
- dict_all.update(self.extra_globals)
-
sage_namespace = RecordingDict(dict_all)
sage_namespace['__name__'] = '__main__'
doctests, extras = self.source.create_doctests(sage_namespace)
diff --git a/src/sage/misc/session.pyx b/src/sage/misc/session.pyx
index 31454dac993..53b732309da 100644
--- a/src/sage/misc/session.pyx
+++ b/src/sage/misc/session.pyx
@@ -27,7 +27,7 @@ This saves a dictionary with ``w`` as one of the keys::
sage: z = load(os.path.join(d.name, 'session'))
sage: list(z)
- ['d', 'w']
+ ['w', 'd']
sage: z['w']
2/3
@@ -68,11 +68,12 @@ AUTHOR:
import builtins
import types
-# We want the caller's locals, but locals() is emulated in Cython
-cdef caller_locals = builtins.locals
-
# Sage imports
from sage.misc.persist import load, save, loads, dumps
+from sage.misc.lazy_import import LazyImport
+
+# We want the caller's locals, but locals() is emulated in Cython
+cdef caller_locals = builtins.locals
# This module-scope variables is used to save the
# global state of the sage environment at the moment
@@ -80,7 +81,6 @@ from sage.misc.persist import load, save, loads, dumps
state_at_init = None
-CythonFunctionType = type(lambda: None)
def init(state=None):
"""
@@ -163,9 +163,13 @@ def _is_new_var(x, v, hidden):
# definitely new.
if x not in state_at_init:
return True
+ # A lazy import that was there at init time is not new
+ if isinstance(v, LazyImport):
+ return False
# A variable could also be new even if it was there at init, say if
# its value changed.
- return x not in state_at_init or state_at_init[x] is not v
+ return state_at_init[x] is not v
+
def show_identifiers(hidden=False):
r"""
@@ -196,7 +200,7 @@ def show_identifiers(hidden=False):
sage: a = 10
sage: factor = 20
sage: show_identifiers()
- ['a', 'factor']
+ ['factor', 'a']
To get the actual value of a variable from the list, use the
:func:`globals()` function.::
@@ -210,7 +214,7 @@ def show_identifiers(hidden=False):
sage: _hello = 10
sage: show_identifiers()
- ['a', 'factor']
+ ['factor', 'a']
sage: '_hello' in show_identifiers(hidden=True)
True
@@ -218,19 +222,13 @@ def show_identifiers(hidden=False):
least in command line mode.::
sage: show_identifiers(hidden=True) # random output
- ['__', '_i', '_6', '_4', '_3', '_1', '_ii', '__doc__', '__builtins__', '___', '_9', '__name__', '_', 'a', '_i12', '_i14', 'factor', '__file__', '_hello', '_i13', '_i11', '_i10', '_i15', '_i5', '_13', '_10', '_iii', '_i9', '_i8', '_i7', '_i6', '_i4', '_i3', '_i2', '_i1', '_init_cmdline', '_14']
+ ['__builtin__', '_ih', '_oh', '_dh', 'exit', 'quit', '_', '__', '___',
+ '_i', '_ii', '_iii', '_i1', 'factor', '_i2', '_2', '_i3', 'a', '_i4',
+ '_i5', '_5', '_i6', '_6', '_i7', '_hello', '_i8', '_8', '_i9', '_9',
+ '_i10']
"""
- from sage.doctest.forker import DocTestTask
state = caller_locals()
- # Ignore extra variables injected into the global namespace by the doctest
- # runner
- _none = object()
-
- def _in_extra_globals(name, val):
- return val == DocTestTask.extra_globals.get(name, _none)
-
- return sorted([x for x, v in state.items() if _is_new_var(x, v, hidden)
- and not _in_extra_globals(x, v)])
+ return [x for x, v in state.items() if _is_new_var(x, v, hidden)]
def save_session(name='sage_session', verbose=False):
@@ -293,28 +291,44 @@ def save_session(name='sage_session', verbose=False):
sage: f = lambda x : x^2
sage: save_session(tmp_f)
sage: save_session(tmp_f, verbose=True)
- Saving...
- Not saving f: f is a function, method, class or type
...
+ Not saving f: f is a function or method
Something similar happens for cython-defined functions::
sage: g = cython_lambda('double x', 'x*x + 1.5')
sage: save_session(tmp_f, verbose=True)
- Saving...
- Not saving g: g is a function, method, class or type
...
+ Not saving g: g is a cython function or method
+
+ And the same for a lazy import::
+
+ sage: from sage.misc.lazy_import import LazyImport
+ sage: lazy_ZZ = LazyImport('sage.rings.integer_ring', 'ZZ')
+ sage: save_session(tmp_f, verbose=True)
+ ...
+ Not saving lazy_ZZ: lazy_ZZ is a lazy import
"""
state = caller_locals()
# This dict D will contain the session -- as a dict -- that we will save to disk.
D = {}
# We iterate only over the new variables that were defined in this
# session, since those are the only ones we will save.
- for k in show_identifiers(hidden = True):
+ for k in show_identifiers(hidden=True):
try:
x = state[k]
- if isinstance(x, (types.FunctionType, types.BuiltinFunctionType, types.BuiltinMethodType, CythonFunctionType, type)):
- raise TypeError('{} is a function, method, class or type'.format(k))
+
+ if isinstance(x, type):
+ raise TypeError('{} is a class or type'.format(k))
+
+ if isinstance(x, (types.FunctionType, types.BuiltinFunctionType, types.BuiltinMethodType)):
+ raise TypeError('{} is a function or method'.format(k))
+
+ if getattr(type(x), '__name__', None) == 'cython_function_or_method':
+ raise TypeError('{} is a cython function or method'.format(k))
+
+ if isinstance(x, LazyImport):
+ raise TypeError('{} is a lazy import'.format(k))
# We attempt to pickle *and* unpickle every variable to
# make *certain* that we can pickled D at the end below.

26
srcpkgs/sagemath/patches/37123-scipy_1.12.patch
View File

@ -1,26 +0,0 @@
diff --git a/src/sage/matrix/matrix_double_dense.pyx b/src/sage/matrix/matrix_double_dense.pyx
index 5d19067f2ed..97e50fb2616 100644
--- a/src/sage/matrix/matrix_double_dense.pyx
+++ b/src/sage/matrix/matrix_double_dense.pyx
@@ -867,7 +867,7 @@ cdef class Matrix_double_dense(Matrix_numpy_dense):
# set cutoff as RDF element
if eps == 'auto':
if scipy is None: import scipy
- eps = 2*max(self._nrows, self._ncols)*scipy.finfo(float).eps*sv[0]
+ eps = 2*max(self._nrows, self._ncols)*numpy.finfo(float).eps*sv[0]
eps = RDF(eps)
# locate non-zero entries
rank = 0
diff --git a/src/sage/numerical/optimize.py b/src/sage/numerical/optimize.py
index 708d440a205..9f973c6bd69 100644
--- a/src/sage/numerical/optimize.py
+++ b/src/sage/numerical/optimize.py
@@ -426,7 +426,7 @@ def minimize(func, x0, gradient=None, hessian=None, algorithm="default",
hess = func.hessian()
hess_fast = [ [fast_callable(a, vars=var_names, domain=float) for a in row] for row in hess]
hessian = lambda p: [[a(*p) for a in row] for row in hess_fast]
- from scipy import dot
+ from numpy import dot
hessian_p = lambda p,v: dot(numpy.array(hessian(p)),v)
min = optimize.fmin_ncg(f, [float(_) for _ in x0], fprime=gradient,
fhess=hessian, fhess_p=hessian_p, disp=verbose, **args)

229
srcpkgs/sagemath/patches/37492-singular_4.3.2p16.patch Normal file
View File

@ -0,0 +1,229 @@
diff --git a/src/sage/interfaces/singular.py b/src/sage/interfaces/singular.py
index 9c9b8ffb8b9..12a9aa582a6 100644
--- a/src/sage/interfaces/singular.py
+++ b/src/sage/interfaces/singular.py
@@ -1211,14 +1211,14 @@ def current_ring(self):
polynomial ring, over a field, global ordering
// coefficients: ZZ/127
// number of vars : 3
- // block 1 : ordering rp
+ // block 1 : ordering ip
// : names x y z
// block 2 : ordering C
sage: singular.current_ring()
polynomial ring, over a field, global ordering
// coefficients: ZZ/127
// number of vars : 3
- // block 1 : ordering rp
+ // block 1 : ordering ip
// : names x y z
// block 2 : ordering C
"""
@@ -2040,6 +2040,9 @@ def _sage_(self, R=None):
elif typ == 'intvec':
from sage.modules.free_module_element import vector
return vector([sage.rings.integer.Integer(str(e)) for e in self])
+ elif typ == 'bigintvec':
+ from sage.modules.free_module_element import vector
+ return vector([sage.rings.rational.Rational(str(e)) for e in self])
elif typ == 'intmat':
from sage.matrix.constructor import matrix
from sage.rings.integer_ring import ZZ
diff --git a/src/sage/libs/singular/decl.pxd b/src/sage/libs/singular/decl.pxd
index e36216d6395..855c95b00bd 100644
--- a/src/sage/libs/singular/decl.pxd
+++ b/src/sage/libs/singular/decl.pxd
@@ -243,7 +243,7 @@ cdef extern from "singular/Singular/libsingular.h":
ringorder_s
ringorder_lp
ringorder_dp
- ringorder_rp
+ ringorder_ip
ringorder_Dp
ringorder_wp
ringorder_Wp
@@ -291,6 +291,10 @@ cdef extern from "singular/Singular/libsingular.h":
int row
int col
+ cdef cppclass bigintmat:
+ int (*length)()
+ number* (*get)(int i)
+
# omalloc bins
ctypedef struct omBin "omBin_s"
@@ -921,6 +925,7 @@ cdef extern from "singular/Singular/libsingular.h":
cdef int MATRIX_CMD
cdef int LIST_CMD
cdef int INTVEC_CMD
+ cdef int BIGINTVEC_CMD
cdef int NONE
cdef int RESOLUTION_CMD
cdef int PACKAGE_CMD
diff --git a/src/sage/libs/singular/function.pyx b/src/sage/libs/singular/function.pyx
index ac4bde0c20b..8284cb921a3 100644
--- a/src/sage/libs/singular/function.pyx
+++ b/src/sage/libs/singular/function.pyx
@@ -98,7 +98,7 @@ from sage.rings.polynomial.multi_polynomial_sequence import PolynomialSequence_g
from sage.libs.singular.decl cimport *
from sage.libs.singular.option import opt_ctx
from sage.libs.singular.polynomial cimport singular_vector_maximal_component
-from sage.libs.singular.singular cimport sa2si, si2sa, si2sa_intvec
+from sage.libs.singular.singular cimport sa2si, si2sa, si2sa_intvec, si2sa_bigintvec
from sage.libs.singular.singular import error_messages
from sage.interfaces.singular import get_docstring
@@ -954,6 +954,8 @@ cdef class Converter(SageObject):
return si2sa(<number *>to_convert.data, self._singular_ring, self._sage_ring.base_ring())
elif rtyp == INTVEC_CMD:
return si2sa_intvec(<intvec *> to_convert.data)
+ elif rtyp == BIGINTVEC_CMD:
+ return si2sa_bigintvec(<bigintmat *> to_convert.data)
elif rtyp == STRING_CMD:
# TODO: Need to determine what kind of data can be returned by a
# STRING_CMD--is it just ASCII strings or can it be an arbitrary
@@ -1231,7 +1233,7 @@ cdef class SingularFunction(SageObject):
Traceback (most recent call last):
...
RuntimeError: error in Singular function call 'size':
- Wrong number of arguments (got 2 arguments, arity code is 302)
+ Wrong number of arguments (got 2 arguments, arity code is 303)
sage: size('foobar', ring=P)
6
@@ -1634,17 +1636,17 @@ def singular_function(name):
Traceback (most recent call last):
...
RuntimeError: error in Singular function call 'factorize':
- Wrong number of arguments (got 0 arguments, arity code is 305)
+ Wrong number of arguments (got 0 arguments, arity code is 306)
sage: factorize(f, 1, 2)
Traceback (most recent call last):
...
RuntimeError: error in Singular function call 'factorize':
- Wrong number of arguments (got 3 arguments, arity code is 305)
+ Wrong number of arguments (got 3 arguments, arity code is 306)
sage: factorize(f, 1, 2, 3)
Traceback (most recent call last):
...
RuntimeError: error in Singular function call 'factorize':
- Wrong number of arguments (got 4 arguments, arity code is 305)
+ Wrong number of arguments (got 4 arguments, arity code is 306)
The Singular function ``list`` can be called with any number of
arguments::
diff --git a/src/sage/libs/singular/ring.pyx b/src/sage/libs/singular/ring.pyx
index 494fd2c0caf..7b05d63e7c7 100644
--- a/src/sage/libs/singular/ring.pyx
+++ b/src/sage/libs/singular/ring.pyx
@@ -24,7 +24,7 @@ from sage.libs.gmp.mpz cimport mpz_init_set_ui
from sage.libs.singular.decl cimport ring, currRing
from sage.libs.singular.decl cimport rChangeCurrRing, rComplete, rDelete, idInit
from sage.libs.singular.decl cimport omAlloc0, omStrDup, omAlloc
-from sage.libs.singular.decl cimport ringorder_dp, ringorder_Dp, ringorder_lp, ringorder_rp, ringorder_ds, ringorder_Ds, ringorder_ls, ringorder_M, ringorder_c, ringorder_C, ringorder_wp, ringorder_Wp, ringorder_ws, ringorder_Ws, ringorder_a, rRingOrder_t
+from sage.libs.singular.decl cimport ringorder_dp, ringorder_Dp, ringorder_lp, ringorder_ip, ringorder_ds, ringorder_Ds, ringorder_ls, ringorder_M, ringorder_c, ringorder_C, ringorder_wp, ringorder_Wp, ringorder_ws, ringorder_Ws, ringorder_a, rRingOrder_t
from sage.libs.singular.decl cimport prCopyR
from sage.libs.singular.decl cimport n_unknown, n_algExt, n_transExt, n_Z, n_Zn, n_Znm, n_Z2m
from sage.libs.singular.decl cimport n_coeffType
@@ -60,7 +60,7 @@ order_dict = {
"dp": ringorder_dp,
"Dp": ringorder_Dp,
"lp": ringorder_lp,
- "rp": ringorder_rp,
+ "ip": ringorder_ip,
"ds": ringorder_ds,
"Ds": ringorder_Ds,
"ls": ringorder_ls,
diff --git a/src/sage/libs/singular/singular.pxd b/src/sage/libs/singular/singular.pxd
index d943a1018a2..f398d27a1fa 100644
--- a/src/sage/libs/singular/singular.pxd
+++ b/src/sage/libs/singular/singular.pxd
@@ -1,4 +1,4 @@
-from sage.libs.singular.decl cimport ring, poly, number, intvec
+from sage.libs.singular.decl cimport ring, poly, number, intvec, bigintmat
from sage.libs.singular.function cimport Resolution
from sage.rings.rational cimport Rational
@@ -29,6 +29,7 @@ cdef object si2sa_ZZmod(number *n, ring *_ring, object base) noexcept
cdef object si2sa_NF(number *n, ring *_ring, object base) noexcept
cdef object si2sa_intvec(intvec *v) noexcept
+cdef object si2sa_bigintvec(bigintmat *v) noexcept
# dispatches to all the above.
cdef object si2sa(number *n, ring *_ring, object base) noexcept
diff --git a/src/sage/libs/singular/singular.pyx b/src/sage/libs/singular/singular.pyx
index cf0124e0a35..0e5c7774e80 100644
--- a/src/sage/libs/singular/singular.pyx
+++ b/src/sage/libs/singular/singular.pyx
@@ -1699,6 +1699,25 @@ cdef object si2sa_intvec(intvec *v) noexcept:
l.append(v.get(r))
return tuple(l)
+cdef object si2sa_bigintvec(bigintmat *v) noexcept:
+ r"""
+ create a sage tuple from a singular vector of big integers
+
+ INPUT:
+
+ - ``v`` -- a (pointer to) singular bigintmat
+
+ OUTPUT:
+
+ a sage tuple
+ """
+ cdef int r
+ cdef list l = list()
+ for r in range(v.length()):
+ n = v.get(r)
+ l.append(si2sa_QQ(n, &n, currRing))
+ return tuple(l)
+
# ==============
# Initialisation
# ==============
diff --git a/src/sage/rings/polynomial/multi_polynomial_libsingular.pyx b/src/sage/rings/polynomial/multi_polynomial_libsingular.pyx
index 70386eb0b50..b18c53de177 100644
--- a/src/sage/rings/polynomial/multi_polynomial_libsingular.pyx
+++ b/src/sage/rings/polynomial/multi_polynomial_libsingular.pyx
@@ -1285,7 +1285,7 @@ cdef class MPolynomialRing_libsingular(MPolynomialRing_base):
polynomial ring, over a field, global ordering
// coefficients: ZZ/2[a]/(a^8+a^4+a^3+a^2+1)
// number of vars : 10
- // block 1 : ordering rp
+ // block 1 : ordering ip
// : names x0 x1 x2 x3 x4 x5 x6 x7 x8 x9
// block 2 : ordering C
@@ -1294,7 +1294,7 @@ cdef class MPolynomialRing_libsingular(MPolynomialRing_base):
polynomial ring, over a field, global ordering
// coefficients: ZZ/127
// number of vars : 2
- // block 1 : ordering rp
+ // block 1 : ordering ip
// : names x0 x1
// block 2 : ordering C
@@ -1303,7 +1303,7 @@ cdef class MPolynomialRing_libsingular(MPolynomialRing_base):
polynomial ring, over a field, global ordering
// coefficients: QQ
// number of vars : 2
- // block 1 : ordering rp
+ // block 1 : ordering ip
// : names x0 x1
// block 2 : ordering C
diff --git a/src/sage/rings/polynomial/term_order.py b/src/sage/rings/polynomial/term_order.py
index 48e49ac89fa..65e68681485 100644
--- a/src/sage/rings/polynomial/term_order.py
+++ b/src/sage/rings/polynomial/term_order.py
@@ -388,7 +388,7 @@
singular_name_mapping = {
'lex' : 'lp',
- 'invlex' : 'rp',
+ 'invlex' : 'ip',
'degrevlex' : 'dp',
'deglex' : 'Dp',
'neglex' : 'ls',

10
srcpkgs/sagemath/patches/get_patches
View File

@ -20,11 +20,5 @@ get_pr() {
# run from patches dir
cd $(dirname "$0")
# all merged in 10.3.beta6 or before
get_pr 35848 "flintlib 3.0"
get_pr 36769 "fix jmol detect"
get_pr 36862 "giac 1.9.0-73"
get_pr 37004 "fix save_session when cython changes"
# positive review
get_pr 37123 "scipy 1.12"
# needs review
get_pr 37492 "singular 4.3.2p16"

83
srcpkgs/sagemath/template
View File

@ -1,13 +1,12 @@
# Template file for 'sagemath'
pkgname=sagemath
version=10.2
revision=2
version=10.3
revision=1
build_wrksrc=pkgs/sagemath-standard
build_style=python3-module
_bindir=/usr/lib/sagemath/$version/bin
make_install_args="--install-scripts=$_bindir"
build_style=python3-pep517
make_build_args="--skip-dependency-check"
hostmakedepends="m4 pkg-config python3-Cython python3-Jinja2
python3-pkgconfig python3-setuptools"
python3-pkgconfig python3-setuptools python3-wheel"
makedepends="boost-devel brial-devel cliquer-devel ecl eclib-devel
ecm-devel fflas-ffpack flintlib-devel gap-devel gd-devel giac-devel glpk-devel
gsl-devel iml-devel lcalc-devel libbraiding-devel libhomfly-devel libmpc-devel
@ -24,7 +23,7 @@ depends="eclib-devel fflas-ffpack flintlib-devel gcc-fortran meson gd-devel
python3-memory_allocator python3-networkx python3-pip python3-pkgconfig
python3-pplpy python3-primecountpy python3-requests python3-scipy
python3-sympy python3-traitlets sage-data-combinatorial_designs
sage-data-conway_polynomials sage-data-elliptic_curves sage-data-graphs
python3-conway-polynomials sage-data-elliptic_curves sage-data-graphs
sage-data-polytopes_db sympow tachyon threejs-sage"
checkdepends="$depends pythran python3-Sphinx"
short_desc="Open source mathematics software"
@ -33,70 +32,42 @@ license="GPL-2.0-or-later"
homepage="https://www.sagemath.org/"
changelog="https://github.com/sagemath/sage/releases"
distfiles="https://github.com/sagemath/sage/archive/refs/tags/$version.tar.gz"
checksum=e7125f13495e1068edab73735aca7f9b2c655688096e9d109e628c023e76411f
checksum=59feb92c05e74d6db7a75f398c45c24b5157b1ecd3d8ac198806e2e6add77d96
nocross="due to ntl (eclib, singular), fflas-ffpack, givaro, linbox, sympow, maxima"
# parallel build
export SAGE_NUM_THREADS="$XBPS_MAKEJOBS"
post_patch() {
# git tree needs bootstrapping
$wrksrc/bootstrap sagelib
}
pre_build() {
export PYTHONPATH=../sage-setup
export PYTHONDONTWRITEBYTECODE=yes
export SAGE_NUM_THREADS="$XBPS_MAKEJOBS"
}
post_build() {
_lib=$(cd build/lib* && pwd)
_scripts=$(cd build/scripts* && pwd)
# configuration files
cp ${FILESDIR}/sage_conf.py $_lib
cp ${FILESDIR}/sage-env-config $_scripts
}
pre_install() {
export PYTHONPATH=../sage-setup
export PYTHONDONTWRITEBYTECODE=yes
export SAGE_NUM_THREADS="$XBPS_MAKEJOBS"
# we need sage_setup here
ln -s ../../src/sage_setup .
}
post_install() {
# fix jupyter kernel spec
vsed -i -e 's|"/usr/bin/sage"|"'${_bindir}'/sage"|' \
${DESTDIR}/usr/share/jupyter/kernels/sagemath/kernel.json
# move scripts to /usr/libexec
vmkdir usr/libexec
mv -T ${DESTDIR}/usr/bin ${DESTDIR}/usr/libexec/sagemath
# replace broken symlinks by good copies (sagemath logo images)
for file in $(ls sage/ext_data/notebook-ipython); do
rm ${DESTDIR}/usr/share/jupyter/kernels/sagemath/$file
cp -a sage/ext_data/notebook-ipython/$file \
${DESTDIR}/usr/share/jupyter/kernels/sagemath
done
# we don't have docs here
rm ${DESTDIR}/usr/share/jupyter/kernels/sagemath/doc
# this symlink is shipped in threejs-sage pkg
rm ${DESTDIR}/usr/share/jupyter/nbextensions/threejs-sage
# copy configuration
cp ${FILESDIR}/sage-env-config ${DESTDIR}/usr/libexec/sagemath
# symlink main binary
vmkdir usr/bin
ln -s $_bindir/sage ${DESTDIR}/usr/bin/sage-${version}
ln -s sage-${version} ${DESTDIR}/usr/bin/sage
ln -s /usr/libexec/sagemath/sage ${DESTDIR}/usr/bin
}
do_check() {
_lib=$(cd build/lib* && pwd)
_scripts=$(cd build/scripts* && pwd)
local testdir="${wrksrc}/.xbps-testdir/$(date +%s)"
python3 -m installer -d "${testdir}" dist/*.whl
export PYTHONPATH=$_lib
export PYTHONDONTWRITEBYTECODE=yes
# get out of $build_wrksrc, otherwise python picks the wrong sage module
cd $(mktemp -dp build)
# this makes for nicer (shorter) relative paths in output
cd ${testdir}/${py3_sitelib}
if [ -f ${XBPS_DISTDIR}/sagemath-check ] ; then
_sed='s|#.*||;/^\s*$/d;s|^\([^ ]*/\)\?sage/|'$_lib'/sage/|g' \
_sed='s|#.*||;/^\s*$/d;s|^\s*\([^ ]*/\)\?sage/|sage/|g' \
_test_files=$(sed -e "$_sed" ${XBPS_DISTDIR}/sagemath-check)
fi
if [ -z "$_test_files" ]; then
@ -105,13 +76,15 @@ do_check() {
cp ${FILESDIR}/timings2.json .
_test_args="--stats_path=timings2.json"
if [ "$XBPS_CHECK_PKGS" = full ]; then
_test_args+=" --long --warn-long 60.0"
_test_args+=" --long --warn-long 30.0"
else
_test_args+=" --warn-long 30.0"
_test_args+=" --warn-long 10.0"
fi
if [ "$XBPS_BUILD_ENVIRONMENT" = "void-packages-ci" ]; then
# for CI use a predictable random seed
_test_args+=" --random-seed=0"
fi
$_scripts/sage -tp ${XBPS_MAKEJOBS} ${_test_args} ${_test_files}
PATH="${testdir}/usr/bin:${PATH}" PYTHONPATH="${testdir}/${py3_sitelib}" \
sage -tp ${XBPS_MAKEJOBS} ${_test_args} ${_test_files}
}

6
srcpkgs/sagemath/update
View File

@ -1,6 +1,6 @@
pkgname="sage"
site="https://mirrors.mit.edu/sage/src/"
if [[ "$version" == *[abr]* ]]; then
site+="
site="https://mirrors.mit.edu/sage/src/
https://mirrors.mit.edu/sage/devel/"
if [[ "$version" != *[abr]* ]]; then
ignore="*[abr]*"
fi