pari: update to 2.13.2.

- enable pthreads build
- switch gp binary to static link libpari; this offsets the slowdown due
  to pthreads
- use -flto and -fno-semantic-interposition which improve speed a little
  bit more
- ship the static library, so external programs can static link
- change of maintainer agreed by sgn

I had to add a minimal patch to the makefile, so that the build step
builds and the install step installs. I will try to upstream that patch.

common/shlibs

@@ -3981,6 +3981,7 @@ libsimavr.so.1 simavr-1.6_2
 libsimavrparts.so.1 simavr-1.6_2
 libsword-1.8.1.so libsword-1.8.1_6
 libpari-gmp.so.7 pari-2.13.0_1
+libpari-gmp-tls.so.7 pari-2.13.2_1
 libtree-sitter.so.0 tree-sitter-0.19.0_1
 libgtkdatabox.so.1 gtkdatabox3-1.0.0_1
 libwayland-client++.so.0 libwaylandpp-0.2.8_1

srcpkgs/pari/patches/makefile.patch

@@ -0,0 +1,36 @@
+Add targets to main makefile:
+ - gp-dyn
+ - gp-sta
+ - lib-dyn
+ - lib-sta
+ - install-lib-dyn
+ - install-bin-dyn
+
+Also: define a .NOTPARALLEL target so that top targets are not run in parallel.
+
+Otherwise, running several targets with -j is broken.
+
+Examples:
+
+1. "make -j8 gp lib-sta lib-dyn" fails once in a while
+
+2. "make -j8 doc docpdf" fails every time
+
+With .NOTPARALLEL, both seem to work reliably.
+
+Reference:
+https://www.gnu.org/software/make/manual/html_node/Special-Targets.html#Special-Targets
+
+--- pari-2.13.2.orig/config/TOP_Make.SH	2020-10-26 09:43:04.000000000 -0300
++++ pari-2.13.2/config/TOP_Make.SH	2021-08-14 15:28:04.052670019 -0300
+@@ -42,7 +42,9 @@
+ 	@\$(MAKE) gp
+ 	@-cd doc && \$(MAKE) doc
++
++.NOTPARALLEL:
+ 
+-gp bench test-kernel test-all install cleanall cleanobj cleantest nsis link-data install-bin install-doc install-docpdf install-nodata install-data install-lib-sta install-bin-sta dobench dyntest-all statest-all tune $top_test_extra $top_dotest_extra::
++gp gp-dyn gp-sta lib-dyn lib-sta bench test-kernel test-all install cleanall cleanobj cleantest nsis link-data install-bin install-doc install-docpdf install-nodata install-data install-lib-dyn install-lib-sta install-bin-dyn install-bin-sta dobench dyntest-all statest-all tune $top_test_extra $top_dotest_extra::
+ 	@dir=\`config/objdir\`; echo "Making \$@ in \$\$dir";\\
+ 	 if test ! -d \$\$dir; then echo "Please run Configure first!"; exit 1; fi;\\
+ 	cd \$\$dir && \$(MAKE) \$@

srcpkgs/pari/template

@@ -1,24 +1,29 @@
 # Template file for 'pari'
 pkgname=pari
-version=2.13.1
+version=2.13.2
 revision=1
 build_style=configure
 build_helper=qemu
 configure_script=./Configure
-configure_args="--prefix=/usr"
-make_build_target=all
-make_check_target=test-all
+configure_args="--prefix=/usr $(vopt_if pthreads --mt=pthread) -s"
+make_build_target="gp lib-sta lib-dyn doc"
+make_check_target=statest-all
+make_install_target="install install-lib-sta install-lib-dyn"
 hostmakedepends="perl texlive"
 makedepends="gmp-devel readline-devel $(vopt_if x11 libX11-devel)"
 short_desc="Fast computations library in number theory"
-maintainer="Đoàn Trần Công Danh <congdanhqx@gmail.com>"
+maintainer="Gonzalo Tornaría <tornaria@cmat.edu.uy>"
 license="GPL-2.0-or-later"
 homepage="https://pari.math.u-bordeaux.fr"
 distfiles="https://pari.math.u-bordeaux.fr/pub/pari/unix/${pkgname}-${version}.tar.gz"
-checksum=81ecf7d70ccdaae230165cff627c9ce2ec297b8f22f9f40742279d85f86dfcb1
+checksum=1679985094a0b723d14f49aa891dbe5ec967aa4040050a2c50bd764ddb3eba24
 
-build_options="x11"
-build_options_default="x11"
+build_options="x11 pthreads"
+build_options_default="x11 pthreads"
+desc_option_pthreads="Enable support for pthreads"
+
+# reduce speed losses due to pthreads
+CFLAGS="-flto -fno-semantic-interposition"
 
 post_patch() {
 	# sse2 is not available on all i686
@@ -50,6 +55,7 @@ pari-devel_package() {
 	depends="pari>=${version}_${revision}"
 	pkg_install() {
 		vmove usr/include
+		vmove "usr/lib/*.a"
 		vmove "usr/lib/*.so"
 	}
 }